Species distribution modelling
Occurrence records and environmental layers are combined to estimate where a species can occur, with sampling bias corrected, absence data used where they exist and uncertainty mapped beside the prediction.
GCRI · Biodiversity Nexus
Ecology and biodiversity science
Ecology is the core science of this platform: it explains how species, populations and ecosystems respond to pressure, which changes matter for ecosystem function, and how losses become changes in the services people depend on. Field survey design and long-term monitoring give the evidence that every model is checked against.
01Register
Ecology and biodiversity science on the record.
Method recordSTEM method
- MethodEcology and biodiversity science
- StewardBiodiversity Nexus
- Applied inBiodiversity Nexus
- Data5 inputs
- Checks4 validation steps
- Canonical pageSTEM Commons
02Application
What ecology and biodiversity science does here.
Ecology studies the interactions among organisms and between organisms and their environment, from populations to ecosystems. It explains how biodiversity loss and ecosystem change alter services such as pollination, water regulation and disease control. In biodiversity and nature, climate and hazards and oceans and coasts, ecological assessment identifies dependencies of agriculture, water and health on natural systems. It supports nature-related disclosure and the evaluation of tipping-point risks. The canonical description is on the STEM Commons.
Population trend and viability analysis
Repeated counts are modelled to separate trend from observation error, and viability analysis estimates how extinction risk changes under alternative management or habitat loss.
Environmental DNA and acoustic surveys
Water, soil or air samples are sequenced and sound recorders deployed to detect species that are hard to see, with detection probability estimated from replicate samples.
03Geography
Habitat condition in the Amazon Basin.
Vegetation, land cover and plant growth over the Amazon Basin, from NASA GIBS. Each layer carries its own date.
The interactive map needs JavaScript; the layer list and sources are below.
Layers 3
Habitat condition, for this page
About this layer
- Evidence
- Observed (clouds leave gaps)
- Source
- MODIS Terra EVI (NASA LANCE)
- Provider
- NASA LANCE
- Licence
- NASA open data
- Vintage
- daily; Satellite index; clouds leave gaps
- Newest at build
- 2026-10-13
- Resolution
- about 250 m grid
- Uncertainty
- Satellite vegetation index for the 8 days to the date shown, a habitat condition indicator; not a measure of species or biodiversity.
- Reached through
- gibs.earthdata.nasa.gov, only after you allow the live map
About this layer
- Evidence
- Modelled (latest year GIBS publishes)
- Source
- MODIS Terra and Aqua land cover (MCD12Q1) (NASA LP DAAC)
- Provider
- NASA LP DAAC
- Licence
- NASA open data
- Vintage
- yearly; Satellite classification; latest year GIBS publishes
- Newest at build
- 2024-01-01
- Resolution
- about 500 m grid
- Uncertainty
- Satellite land cover classes for the year shown, including croplands; a classification with known errors, not a farm register.
- Reached through
- gibs.earthdata.nasa.gov, only after you allow the live map
About this layer
- Evidence
- Modelled (latest 8-day period GIBS publishes)
- Source
- MODIS Aqua GPP (MYD17) (NASA LP DAAC)
- Provider
- NASA LP DAAC
- Licence
- NASA open data
- Vintage
- 8-day; Satellite-driven model; latest 8-day period GIBS publishes
- Newest at build
- 2026-09-30
- Resolution
- about 500 m grid
- Uncertainty
- Model estimate of carbon taken up by plants over the 8-day period shown; an indicator of growth, not harvest or production.
- Reached through
- gibs.earthdata.nasa.gov, only after you allow the live map
About this layer
- Evidence
- Observed
- Source
- VIIRS NOAA-20 corrected reflectance (NASA LANCE)
- Provider
- NASA LANCE
- Licence
- NASA open data
- Vintage
- daily; Satellite image
- Newest at build
- 2026-10-14
- Resolution
- about 250 m grid
- Uncertainty
- Satellite image. Satellite or model raster as the provider publishes it. Clouds, swath gaps and retrieval error leave gaps and noise; values are indicators, not measurements at a place.
- Reached through
- gibs.earthdata.nasa.gov, only after you allow the live map
About this layer
- Evidence
- Observed (clouds and overpass timing leave gaps)
- Source
- VIIRS NOAA-20 375 m (FIRMS) (NASA LANCE FIRMS)
- Provider
- NASA LANCE FIRMS
- Licence
- NASA open data
- Vintage
- daily; Satellite detection; clouds and overpass timing leave gaps
- Newest at build
- 2026-10-13
- Resolution
- about 500 m grid
- Uncertainty
- Satellite hot-spot detections for the day shown, including gas flares and industrial heat; not a confirmed fire, an incident report or a warning.
- Reached through
- gibs.earthdata.nasa.gov, only after you allow the live map
About this layer
- Evidence
- Estimated
- Source
- Gridded Population of the World v4.11 (NASA SEDAC (CIESIN, Columbia University))
- Provider
- NASA SEDAC (CIESIN, Columbia University)
- Licence
- CC BY 4.0
- Vintage
- null; Census-based estimate, static (2020)
- Resolution
- about 1 km grid
- Uncertainty
- Census-based estimate of people per square kilometre in 2020, shown as exposure context; not a count of people affected by any hazard.
- Reached through
- gibs.earthdata.nasa.gov, only after you allow the live map
Keyboard, with the map focused
Hold Ctrl or ⌘ and scroll to zoom
Latest available
NASA GIBS / EOSDIS · ASTER GDEM (METI, NASA) · Blue Marble (NASA) · © OpenStreetMap contributors (ODbL) · Natural Earth
Loading the latest NASA imagery.
Drag to move. Ctrl or ⌘ and scroll, pinch or the buttons to zoom; hover for the values under the pointer; reset returns to the region.
Habitat condition, framed on the Amazon Basin.Satellite and model products as NASA publishes them, each with its own date. They are indicators, not assessments of any place.
Data: NASA GIBS · ASTER GDEM · Blue Marble · © OpenStreetMap contributors · Natural Earth · NASA EONET · NASA JPL OPERA DIST-ALERTSources and licences
- We acknowledge the use of imagery provided by services from NASA’s Global Imagery Browse Services (GIBS), part of NASA’s Earth Science Data and Information System (ESDIS). Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). NASA open data
- We acknowledge the use of imagery provided by services from NASA’s Global Imagery Browse Services (GIBS), part of NASA’s Earth Science Data and Information System (ESDIS). Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). NASA open data
- MODIS land products (vegetation indices, gross primary production, land cover), NASA LP DAAC and LANCE; imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). NASA open data
- VIIRS near-real-time products (flood, land surface temperature, snow cover, corrected reflectance), NASA LANCE; imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). NASA open data
- NASA Fire Information for Resource Management System (FIRMS), VIIRS 375 m active fire product, NASA LANCE; vector tiles via NASA GIBS. Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). NASA open data
- Center for International Earth Science Information Network (CIESIN), Columbia University. 2018. Gridded Population of the World, Version 4 (GPWv4): Population Density, Revision 11. NASA Socioeconomic Data and Applications Center (SEDAC). Licensed under CC BY 4.0. Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). doi:10.7927/H49C6VHW. CC BY 4.0
- ASTER GDEM is a product of METI and NASA (ASTER Global Digital Elevation Model V003, NASA LP DAAC); imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). Cite as: NASA/METI/AIST/Japan Spacesystems and U.S./Japan ASTER Science Team (2019). ASTER Global Digital Elevation Model V003. doi:10.5067/ASTER/ASTGTM.003. NASA open data
- Made with Natural Earth. Free vector and raster map data @ naturalearthdata.com. Public domain
- © OpenStreetMap contributors (ODbL), via NASA GIBS (coastlines, boundaries, roads and place names). Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). ODbL
- Blue Marble, NASA Earth Observatory; imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into hexagonal cells where shown (modified). NASA open data
- Context on the globe and flat map: coastlines, boundaries, roads and place names from NASA GIBS reference layers (OpenStreetMap data, ODbL, © OpenStreetMap contributors); Blue Marble imagery as an optional base; 3D terrain and the elevation read-out from the ASTER GDEM elevation colour index (5 m to 200 m classes, exaggerated for legibility). Boundaries are drawn as published and imply no position on any territory.
- Live events: NASA Earth Observatory Natural Event Tracker (EONET); events are indicative and keep their original source links.
- Live: NASA EONET Events are indicative, not authority warnings.
- Observed (EO): NASA JPL OPERA DIST-ALERT (contains modified Copernicus Sentinel data 2026). We acknowledge the use of imagery provided by services from NASA’s Global Imagery Browse Services (GIBS), part of NASA’s Earth Science Data and Information System (ESDIS).
- NASA GIBS: We acknowledge the use of imagery provided by services from NASA’s Global Imagery Browse Services (GIBS), part of NASA’s Earth Science Data and Information System (ESDIS).
- Optional layers (6 sources in the layer list: live, forecast, observed and context) print their provider credit on the map and here when switched on; forecasts are model output and derived indices are estimates.
Layers and dates
- Enhanced vegetation index, rolling 8 days: MODIS Terra EVI, NASA LANCE · 13 Oct 2026
- Land cover type (IGBP), yearly: MODIS Terra and Aqua land cover (MCD12Q1), NASA LP DAAC · 2024
- Gross primary production, 8-day total: MODIS Aqua GPP (MYD17), NASA LP DAAC · 30 Sep 2026
- True colour: VIIRS NOAA-20 corrected reflectance, NASA LANCE · 13 Oct 2026
- Active fires and thermal anomalies: VIIRS NOAA-20 375 m (FIRMS), NASA LANCE FIRMS · 13 Oct 2026
- Population density, 2020: Population: CIESIN, Columbia University, Gridded Population of the World v4.11 (2018), NASA SEDAC, CC BY 4.0 · static
04Data
What the method consumes.
Datasets and records used by ecology and biodiversity science on this platform, with the role each plays and the label its values carry. Sources are listed in the source register.
| Data | Role | Label |
|---|---|---|
| GBIF and OBIS occurrence records | Distribution modelling and gap analysis | OBSERVED |
| IUCN Red List assessments and range maps | Threat status and ranges | Published statistics |
| Standardised monitoring schemes | Population trends | OBSERVED |
| Environmental DNA sequence data | Species detection | OBSERVED |
| Long Term Ecological Research site data | Ecosystem processes and change | OBSERVED |
05Twin and cascade simulator
Model ecology and biodiversity science as a system. Run the cascade.
Assembled from the Nexus Standards area profile Biodiversity and nature risk standards: the hazards it names, the systems and sectors that carry the loss, the controls that dampen it and the data that observe it. Choose the components, pick an initiating hazard and step through the cascade. The Map view places the run on an example geography with open data. Every coupling weight is a stated assumption you can change. A teaching model, not a forecast, an assessment or a certification. To model a place of your own choosing, open the full System Builder.
Hazards
- Deforestation
- Biodiversity loss (set off downstream)
- Soil erosion (set off downstream)
- Land-system change boundary transgression (set off downstream)
- Amazon rainforest dieback (set off downstream)
- Slope slide (set off downstream)
- Flash flood (set off downstream)
- Zoonotic spillover event (set off downstream)
- Wildfire (set off downstream)
- Emerging arbovirus outbreak (set off downstream)
- Malaria resurgence (set off downstream)
Systems and couplings
- Biodiversity and nature risk standards
- Climate risk standards Feedback
- Health risk standards Cascade
- Food and agriculture risk standards Dependency
- Environmental degradation hazard standards Shared hazard records
Controls
NS-0Constitution and principlesNS-1The UNI and the artefact catalogue (grammar v0.2: domain, sector, region and environment segments)NS-3Risk record UNIs (grammar, legacy crosswalk, allocation authority)NS-3bDataset and product metadata profile (STAC, DCAT, PROV-O)NS-5Figure, map and visualisation standard (with the UI/UX kit)NS-9Contextual UNIs (deployments, instances, programme instances)NS-11Verification and monitoring (evidence, attestations, zero-trust conformance observation)NRS-N5Biodiversity and nature risk and resilienceNRS-H65Hazard family: Planetary boundary transgressions (NHS-1 planet.boundary)NRS-H27Hazard family: Biodiversity and species stress (NHS-1 eco.species)NRS-H26Hazard family: Land and wetland degradation (NHS-1 eco.land)NRS-H28Hazard family: Climate-state shifts (NHS-1 eco.climate-state)NRS-H64Hazard family: Ecosystem regime shifts (NHS-1 eco.regime-shift)
Observation
- GBIF occurrence API and downloads (listed for reference)
- World Database on Protected and Conserved Areas (listed for reference)
- Global Forest Watch tree cover loss (Hansen/UMD) and alerts (listed for reference)
- ESA WorldCover 10 m land cover (listed for reference)
- Copernicus Land Monitoring Service products (listed for reference)
- Red List Index
- Forest area as a proportion of total land area
- Proportion of important sites for terrestrial and freshwater biodiversity covered by protected areas
Example geography
- Pacific Island states: 150 hexagonal cells
- Vegetation disturbance alerts, 30 m (OPERA DIST-ALERT), NASA GIBS
- Surface soil moisture (SMAP), NASA GIBS
- Night lights tonight, outages (VIIRS Day/Night Band), NASA GIBS
- Rain rate, last half hour (IMERG), NASA GIBS
06Validation
How results are checked.
Predictions are compared with independent survey data and long-term monitoring sites. Experimental manipulations and natural experiments test causal mechanisms.
| Check | How it is done |
|---|---|
| Independent survey validation | Distribution models are tested against survey data not used in fitting, held out in spatially separate blocks |
| Detection and observer effects | Occupancy and abundance models account for imperfect detection and changing observer effort |
| Taxonomic verification | Identifications are checked against reference collections and a taxonomic backbone before analysis |
| Sampling bias assessment | Record density is compared with access and effort so that gaps are not read as absence |
Ecosystems show nonlinear responses and thresholds that are hard to anticipate from past data. Sampling is uneven across regions and taxa.
07Sector signature
The sector signature of ecology and biodiversity science.
The sectors ecology and biodiversity science touches and how strongly they depend on each other: what a study has to observe and model together.
Select corners · hover lines6 / 15 relations
Signature
Biodiversity and its partners
Biodiversity gives pollination and soils to food (0.6), watershed regulation to water (0.5) and zoonotic spillover and medicines to health (0.4).
W · E · I · F · H · B
- Sectors
- 4 of 6
- Relations
- 6 of 15
- Coupling
- 0.46 share of total
Strongest relations in play
- Food → Biodiversity · land conversion0.6
- Water → Food · irrigation0.8
- Water → Biodiversity · environmental flows0.6
- Food → Health · nutrition0.7
09Methods and evidence
How ecology and biodiversity science is modelled, measured and tested.
The model, its assumptions, its data and its uncertainty, in the form a scientist or engineer would check. Structures follow published methods. The values drawn are illustrative, not findings.
Earth observation chain
How a satellite or sensor record becomes evidence on ecology and biodiversity science, and where each step adds uncertainty.
- 01 · Acquireorbit, sensor and revisitUncertainty: gaps from cloud and orbit
- 02 · Calibrateradiometric and geometricUncertainty: sensor drift
- 03 · Correctatmosphere and terrainUncertainty: aerosol and slope assumptions
- 04 · Retrieve or classifythe variable or the classUncertainty: model and training error
- 05 · Validateagainst ground truthUncertainty: sample design and size
- 06 · Publishwith error bars and lineageUncertainty: stated, never hidden
FAIR guiding principles · GO FAIR and FORCE11W3C PROV · World Wide Web ConsortiumGuidance on consistent treatment of uncertainties · IPCCCEOS Analysis Ready Data · Committee on Earth Observation Satellites
10Stewardship
Who maintains the method.
Biodiversity Nexus stewards ecology and biodiversity science for the Consortium and reviews how it is applied across platforms.
11Process
How the process runs.
Process
Ecology and biodiversity science: Source to evidence record
A source is registered and assessed, its record labelled and classified, and a Digital Evidence Passport carries provenance; a correction reaches every dependent record.
01 Intake
- 01Identify the sourceSource · The source stewardDiscovery is not ingestion. Source identification records the source class, steward, institutional role and jurisdiction.
- 03Register the sourceStepRegistration makes a discovered source a governed participant in the evidence lifecycle. It implies no endorsement or certification.
02 Assessment
- 04Jurisdiction and rights classificationGateRights classification identifies licence, consent, confidentiality and reuse limits. The result determines access and routing.
- 05Evidence quality assessmentStepQuality assessment decides whether a record is fit for a defined use. Quality is multidimensional and never a single score.
- 06Evidence labelStepEvery finding carries one of nine evidence labels. Missing data is shown as missing, never as zero.
03 Record
- 07Evidence classificationRecordClassification gives records lifecycle states, such as source-verified, public-safe or restricted. States can coexist and set evidence use.
- 08Source release and identifierRecord · NXS-GRX (canonical data, provenance and risk)A source release records rights, temporal coverage and source lineage. A UNI is allocated through a catalogue and never typed by hand.
- 09Digital Evidence PassportRecordThe passport records provenance, quality, rights, jurisdiction, permitted use and history, so evidence keeps its context when it travels.
04 Use and correction
- 02Correction reaches dependent recordsStep · NXS-GRX (canonical data, provenance and risk)A source correction propagates to dependent cuts and products without rewriting old results.
- 10Public-safe reviewGatePublic-safe review decides whether a record can be shared publicly. It is a distinct stage and is not validation.
Data protocols: evidence lifecycle · Data protocols: core data objects and evidence records · The Global Risks Index (NXS-GRX)Designed programme process, not a record of operation. No cycle has run and every programme is at service level R0. A gate is a programme decision, never a public-authority approval, certification or deployment authorisation. The data-protocol pages describe a design, not a running system.
12Questions
Questions and answers.
What are the limits of ecology and biodiversity science in this field?
Ecosystems show nonlinear responses and thresholds that are hard to anticipate from past data. Sampling is uneven across regions and taxa.
How are results checked?
Predictions are compared with independent survey data and long-term monitoring sites. Experimental manipulations and natural experiments test causal mechanisms.
Are the values on this page real?
The data names, roles and checks are real descriptions of practice. The canvas shows a design of the method’s use, not a run; no result is reported here.
Where else is this method applied?
The canonical method page lists every platform that applies it.
ReportsContribute
Contribute evidence from this page.
Reports is the Consortium’s quarterly publication. What you know about this subject can become evidence, a case or a correction in the next edition, credited to you and published under CC BY 4.0 where it is your own work.
GCRIBiodiversity NexusGlobal Sector Risk and ResilienceObservatory Signal
- EmailGateway GW-GCRISend it from this pageEvidence, a correction, a case, a method, a review, a translation or profile input. It arrives tagged with this page, so the editor who owns it receives it.
- ZenodoOpen depositDeposit it and submit to the communityPublish your own record on Zenodo with your ORCID iD, then submit it to the Reports community there. Curators review it; the DOI stays yours.
- ReportsGCRISee every way to contributeThe contribution types, how each is reviewed, what credit you receive, the licence and what is never accepted.
Never send personal data, sensitive infrastructure detail or anything you have no right to share. A contribution is reviewed before use; sending it confers no authorship or editorial rights, and sponsorship never buys a finding.
Biodiversity Nexus
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Information and enquiries are open today. An enquiry receives a reference and names the next step; applications, payments, compute allocations and registrations open only when their team, terms and review capacity exist.
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