G-P10 · TOPIC · reproducible-pipelinesGCRI dossier · service level R0
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Topic dossier · Data and Compute

Reproducible pipelines

A result can be trusted when others can rerun the same analysis on the same data and get the same answer, and when they can trace each number to its source. Reproducible pipelines combine versioned data and code, recorded environments, workflow systems and provenance. This page sets out why analyses fail to reproduce, how reproducibility is engineered and checked, and what evidence serves the researchers, publishers and agencies that depend on it.

Systems · around this subjectDesign, not a record

Data platform and pipelines

Reproducible pipelines · Public data platform · Catalogue v9

Rights review openGCRI · Data and Compute

Datasets

Flood extentsOpenCompleteYesPublished
Health facility listOpenCompleteYesPublished
Mobility tracesRestrictedPartialn/aRights review
Household surveyRestrictedCompleteYesAccess by request

Pipeline checks

Pinned dependencies76 pct · req 100Deterministic outputs90 pct · req 95Provenance recorded95 pct · req 100
Data platform and pipelines: the screen's structure, terms and states for Reproducible pipelines.Placeholder names and illustrative values; a design, not a record or a live system.

Fig.Data platform and pipelines. Design wireframe with placeholder names and illustrative values, not a record or a live system.

01In brief

The short answer.

Reproducible data pipelines are analysis workflows built so that others can rerun them on the same data and obtain the same results. They combine versioned data and code, recorded environments, automated workflows and provenance, which also lets errors be traced and corrections reach every affected output.

02Geography

Connected activity in the contiguous United States.

For reproducible pipelines, in GCRI's spatial-intelligence reading, the map opens on night lights, true-colour imagery and population density with true colour from NASA GIBS, framed on the contiguous United States; every other NASA layer, live feed and forecast waits in the layer list.

The interactive map needs JavaScript; the layer list and sources are below.

Layers 3

Connected activity, for this page

Latest available

NASA GIBS / EOSDIS · ASTER GDEM (METI, NASA) · Blue Marble (NASA) · © OpenStreetMap contributors (ODbL) · Natural Earth

Loading the latest NASA imagery.

Drag to move. Ctrl or ⌘ and scroll, pinch or the buttons to zoom; hover for the values under the pointer; reset returns to the region.

For reproducible pipelines, in GCRI's spatial-intelligence reading, the map opens on night lights, true-colour imagery and population density with true colour from NASA GIBS, framed on the contiguous United States; every other NASA layer, live feed and forecast waits in the layer list.Satellite and model products as NASA publishes them, each with its own date; indicators, not assessments of any place; claim ceiling INTEGRATED.

Data: NASA GIBS · ASTER GDEM · Blue Marble · © OpenStreetMap contributors · Natural Earth · Copernicus Sentinel-2 L2A · NASA HLS S30Sources and licences

  • We acknowledge the use of imagery provided by services from NASA's Global Imagery Browse Services (GIBS), part of NASA's Earth Science Data and Information System (ESDIS). Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). NASA open data
  • We acknowledge the use of imagery provided by services from NASA's Global Imagery Browse Services (GIBS), part of NASA's Earth Science Data and Information System (ESDIS). Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). NASA open data
  • VIIRS Black Marble night-time lights, NASA Goddard Space Flight Center; distributed by the NASA Level-1 and Atmosphere Archive and Distribution System (LAADS DAAC); imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). NASA open data
  • VIIRS near-real-time products (flood, land surface temperature, snow cover, corrected reflectance), NASA LANCE; imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). NASA open data
  • Center for International Earth Science Information Network (CIESIN), Columbia University. 2018. Gridded Population of the World, Version 4 (GPWv4): Population Density, Revision 11. NASA Socioeconomic Data and Applications Center (SEDAC). Licensed under CC BY 4.0. Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). CC BY 4.0
  • MODIS land products (vegetation indices, gross primary production, land cover), NASA LP DAAC and LANCE; imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). NASA open data
  • ASTER GDEM is a product of METI and NASA (ASTER Global Digital Elevation Model V003, NASA LP DAAC); imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). NASA open data
  • Made with Natural Earth. Free vector and raster map data @ naturalearthdata.com. Public domain
  • © OpenStreetMap contributors (ODbL), via NASA GIBS (coastlines, boundaries, roads and place names). Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). ODbL
  • Blue Marble, NASA Earth Observatory; imagery via NASA GIBS. Colours redrawn from the published colour map; values averaged into H3 cells where shown (modified). NASA open data
  • Context on the globe and flat map: coastlines, boundaries, roads and place names from NASA GIBS reference layers (OpenStreetMap data, ODbL, © OpenStreetMap contributors); Blue Marble imagery as an optional base; 3D terrain and the elevation read-out from the ASTER GDEM elevation colour index (5 m to 200 m classes, exaggerated for legibility). Boundaries are drawn as published and imply no position on any territory.
  • Globe: MapLibre GL JS 6.9.1, BSD-3-Clause, © MapLibre contributors.
  • Observed (EO): Copernicus Sentinel-2 L2A (contains modified Copernicus Sentinel data 2026), Microsoft Planetary Computer
  • Observed (EO): NASA HLS S30 (contains modified Copernicus Sentinel data 2026). We acknowledge the use of imagery provided by services from NASA's Global Imagery Browse Services (GIBS), part of NASA's Earth Science Data and Information System (ESDIS).
  • Optional layers (35 sources in the layer list: live, forecast, observed and context) print their provider credit on the map and here when switched on; forecasts are model output and derived indices are estimates.

Layers and dates

  • Night-time lights, daily: VIIRS Black Marble (VNP46A2), NASA LAADS DAAC · 12 Oct 2026
  • True colour: VIIRS NOAA-20 corrected reflectance, NASA LANCE · 13 Oct 2026
  • Population density, 2020: Population: CIESIN, Columbia University, Gridded Population of the World v4.11 (2018), NASA SEDAC, CC BY 4.0 · static
  • Land cover type (IGBP), yearly: MODIS Terra and Aqua land cover (MCD12Q1), NASA LP DAAC · 2024
  • Enhanced vegetation index, rolling 8 days: MODIS Terra EVI, NASA LANCE · 13 Oct 2026
  • Vegetation greenness (NDVI), rolling 8 days: MODIS Terra NDVI, NASA LANCE · 13 Oct 2026

03The question

Reproducible pipelines: how the risk develops.

Pipelines, models and experiment provenance. The dossier below sets out how the risk develops, what is measured, where the data come from, how it is modelled and who decides.

Mechanism

Environments drift

Software libraries, operating systems and hardware change. An analysis that ran last year may give different results, or none, without a recorded environment.

Mechanism

Data versions change

Datasets are corrected and updated. Unless the exact version used is recorded, results cannot be traced or rerun.

Mechanism

Manual steps break chains

Steps done by hand in spreadsheets or interactive sessions are not recorded and cannot be repeated exactly.

Mechanism

Provenance links results to sources

Recording which inputs, code and parameters produced each output lets errors be traced and corrections propagate.

04Key terms

Terms used on this page.

Each term as this page uses it. Where a standard-setting body defines the term, the wording follows that body.

TermDefinition
Workflow systemSoftware that defines and runs analysis steps in order and records how outputs were produced.
ContainerA packaged software environment, with its libraries and settings, that runs consistently across computers.
DOIA digital object identifier that persistently identifies publications, datasets or software.
05Indicators

What is measured, and how well.

Each indicator carries its unit, its cadence, the kind of source behind it and the evidence label a value would carry. No values are shown: a programme supplies them under its own authority.

IndicatorUnitCadenceSource typeLabel
Published analyses with code and data availablepercent of outputsper auditPublication auditsOBSERVED
Analyses rerun successfully by a third partypercent of attempted rerunsper auditReproduction studiesOBSERVED
Datasets with persistent identifierspercent of datasetsannualRepository metadataOBSERVED
Pipelines with recorded environmentspercent of production pipelinesper assessmentPipeline repositoriesDECLARED
Corrections issued after reproduction checkscountannualCorrection logsOBSERVED
Software archived with identifierscountannualSoftware archive recordsOBSERVED
06Canvas

From sources to decisions.

The topic as a computational graph: named sources feed the methods, an evidence review gates the outputs, and the decisions stay with the authorities that hold them.

Pipeline canvas · Reproducible pipelines as a run graphDesign, not a record
Reproducible pipelines: from a source to a labelled evidence recordA source is registered with its licence and steward, checked for quality and coverage, labelled by evidence class, versioned and published with a passport; corrections create a new version. Design of the process, not a record of a run.

Fig. 02Nodes carry their type, two metric rows and a state; connectors show what feeds what; dashed frames name the owners; the timeline is the cadence. Design of the pipeline, not a record of a run.

07Sources

Where the evidence comes from.

Named public datasets and institutional records, each with its licence class. Sources by agreement are used only under their terms and never republished.

SourceWhat it givesLicence class
DataCite and Crossref metadataPersistent identifiers for data, software and publicationsOpen, CC0 metadata
Software Heritage archiveArchived source code with intrinsic identifiersOpen, archive terms
Zenodo and institutional repositoriesDeposited data and code with identifiersOpen, licence per record
W3C PROV standardA model for representing provenanceOpen standard, W3C terms
Reproducibility studies in published literatureMeasured reproduction rates in fieldsLicence per publication
08Decisions

Who decides, and what the evidence serves.

Data and Compute prepares evidence. The decisions below are taken by the authorities named, under their own rules, and never by the platform.

Who decidesThe questionEvidence this page serves
Research teams and analystsHow to structure pipelines so results can be rerunChecklists; pipeline templates
Publishers and report editorsWhat reproducibility evidence to requireAudit methods
Funders and agenciesWhether to fund archiving and reproducibility supportReproduction rate evidence

Outputs this topic produces

  • Reproducibility checklists for analyses and reports
  • Pipeline templates with versioned data, code and environments
  • Provenance recording designs
  • Audit methods for reproduction of published results
09Core questions

What experts ask about reproducibility.

  • Can this result be regenerated from recorded inputs, or does it depend on undocumented steps?
  • Which exact version of the data, code and model produced it?
  • If an error is found upstream, which downstream results are affected?
  • Will the pipeline still run in years, after software and hardware have changed?
  • Can a reviewer without the original team understand what each step does and why?
  • Are random seeds, model weights and configuration choices recorded with each result?
10Mechanisms

Why results become irreproducible.

Irreproducibility is rarely deliberate. It accumulates through small, reasonable shortcuts made under deadline pressure, each harmless alone. The cost appears later, when a result is questioned, a correction is needed or a team member leaves.

Environments

Software drift

Libraries and dependencies change, so the same code produces different results or stops running.

Data

Moving inputs

Datasets are updated in place without versioning, so the original input cannot be recovered.

Process

Manual steps

Undocumented manual cleaning or parameter choices cannot be repeated by others.

11Methods and limits

How pipelines are made reproducible.

  1. 01

    Version control

    Tracking code, configuration and, where possible, data versions. Limits: large datasets need specialized tools.

  2. 02

    Containerized environments

    Packaging software dependencies so they can be rebuilt. Limits: containers themselves depend on underlying systems that change.

  3. 03

    Workflow systems and provenance

    Tools that run pipelines and record each step, studied under data engineering, interoperability and stewardship. Limits: adoption requires effort and discipline.

  4. 04

    Numerical reproducibility

    On parallel and accelerated hardware, floating-point results can differ slightly between runs, a matter for computing specialists. Limits: exact bitwise reproducibility is sometimes impractical, so tolerances must be stated.

12Methods

How it is studied, and what the methods cannot say.

13Questions

Questions and answers.

What is the difference between reproducibility and replicability?
Reproducibility usually means getting the same results from the same data and code; replicability means getting consistent results from new data, though usage varies by field.
What is a persistent identifier?
A long-lasting reference to a digital object, such as a DOI, that continues to resolve even if the object's location changes.
What is data provenance?
A record of the origin of data and every transformation applied to it on the way to a result.
Is reproducibility the same as correctness?
No. A wrong analysis can be perfectly reproducible. Reproducibility makes errors findable and correctable.
Why can results differ on different hardware?
Parallel computations can add numbers in different orders, and floating-point arithmetic is not perfectly associative, so tiny differences can arise.
Does the platform review other teams' pipelines?
No. It publishes patterns that teams can apply themselves.
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